I’ve roughly categorized the papers into either clinical, bio, or hybrid.
Clinical Informatics
- The effect of computerised decision support alerts tailored to intensive care on the administration of high-risk drug combinations, and their monitoring: a cluster randomised stepped-wedge trial
- Evaluation and mitigation of the limitations of large language models in clinical decision making
- CORAL: Expert-Curated Oncology Reports to Advance Language Model Inference
- Interpretable physiological forecasting in the ICU using constrained data assimilation and electronic health record data
- Enhanced phenotypes for identifying opioid overdose in emergency department visit electronic health record data
- Manual vs AI-Assisted Prescreening for Trial Eligibility Using Large Language Models—A Randomized Clinical Trial
- An electronic health record metadata-mining approach to identifying patient-level interprofessional clinician teams in the intensive care unit
- Efficacy of the mLab App: a randomized clinical trial for increasing HIV testing uptake using mobile technology
- Early detection of celiac disease through its common symptoms using machine learning algorithms
Bioinformatics
- Moving towards genome-wide data integration for patient stratification with Integrate Any Omics
- Simulating 500 million years of evolution with a language model, Thomas Hayes et al.
- Yuan, Q., Duren, Z. Inferring gene regulatory networks from single-cell multiome data using atlas-scale external data.
- Tan, J., Shenker-Tauris, N., Rodriguez-Hernaez, J. et al. Cell-type-specific prediction of 3D chromatin organization enables high-throughput in silico genetic screening.
- Integrating multimodal data to understand cortical circuit architecture and function
- Continuous cell type diversification throughout the embryonic and postnatal mouse visual cortex development
- Multiscale footprints reveal the organization of cis-regulatory elements
- Accurate structure prediction of biomolecular interactions with AlphaFold 3
- A foundation model of transcription across human cell types
- Computational design of serine hydrolases
- Engineering bacteriophages through deep mining of metagenomic motifs
- Multiscale graph equivariant diffusion model for 3D molecule design
- Spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis | Nature Genetics
- A statistical approach for systematic identification of transition cells from scRNA-seq data